ATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCGATCG
GCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTA
AIM³ Institute · 8Z-LO Framework · FASTA Collection

50 Genomes,
One Corpus

From a 2.5 KB retinal transcript to a 140 MB human chromosome — the complete dataset for mathematical structure discovery and genomic compression benchmarking.

50
FASTA Files
1.58 GB
Total Size
5
Categories
3
Domains of Life
Taxonomic Coverage

All Three Domains of Life + Viruses

27
EUK · Eukaryota
3
VIR · Viruses
2
BAC · Bacteria
1
ARC · Archaea
4
ORG · Organelles
5
TRX · Transcripts
8
Species
Complete Manifest

All 50 FASTA Files

Sorted by size ascending. Size classes: tiny <10 KB · small 10–200 KB · medium 200 KB–5 MB · large 5–50 MB · huge >50 MB

IdxTechnical FilenameSize (bytes)CatBiological Context
F01F01_TRX_Hs_Retina_NM_001014890.2.fasta2,530TRXHuman Retina mRNA; baseline scanner calibration
F02F02_TRX_Hs_SYN1_NM_006950.3.fasta3,330TRXSynapsin I transcript; neuronal signal regulation
F03F03_TRX_Hs_NR4A2_NM_006186.4.fasta3,631TRXNuclear receptor; dopamine neuron development
F04F04_TRX_Hs_GNG2_NM_001243773.2.fasta3,711TRXG-protein subunit; essential signaling molecule
F05F05_TRX_Hs_GNB4_NM_021629.4.fasta6,471TRXGuanine nucleotide-binding protein; signal routing
F06F06_VIR_HIV1_AF033819.3.fasta9,349VIRHIV-1 Genome; high mutation rate, chaotic structure
F07F07_VIR_Rabies_NC_001542.1.fasta12,147VIRRabies virus; negative-strand RNA architecture
F08F08_EUK_Ce_chrM_NC_001328.1.fasta14,086EUKC. elegans mitochondrial DNA
F09F09_ORG_Mm_mito_NC_005089.1.fasta16,590ORGMouse mitochondrial DNA; "cellular battery" genome
F10F10_ORG_Hs_mito_NC_012920.1.fasta16,864ORGHuman mitochondrial DNA; conserved circular structure
F11F11_ORG_Zm_mito_NC_007982.1.fasta16,958ORGMaize (Zea mays) mitochondrion; plant organelle
F12F12_VIR_SARS2_NC_045512.2.fasta30,429VIRSARS-CoV-2; long RNA virus with high secondary structure
F13F13_ORG_At_chloro_NC_000932.1.fasta156,749ORGArabidopsis chloroplast DNA; photosynthetic machinery
F14F14_EUK_Hs_AC010145.fasta204,719EUKHuman MYCN region; amplified in certain cancers
F15F15_EUK_Sc_chrI_NC_001133.9.fasta233,584EUKYeast Chromosome I; smallest eukaryotic chromosome
F16F16_EUK_Sc_chrVIII_NC_001140.6.fasta572,081EUKYeast Chromosome VIII; medium-scale fungal DNA
F17F17_EUK_Sc_chrV_NC_001137.3.fasta586,543EUKYeast Chromosome V
F18F18_EUK_Sc_chrII_NC_001134.8.fasta826,794EUKYeast Chromosome II
F19F19_EUK_Sc_chrXIII_NC_001145.3.fasta939,899EUKYeast Chromosome XIII
F20F20_EUK_Sc_chrXVI_NC_001148.4.fasta963,926EUKYeast Chromosome XVI
F21F21_BAC_Syn1_CP002027.1.fasta1,094,313BACSynthetic Mycoplasma; first "man-made" genome
F22F22_EUK_Sc_chrXII_NC_001144.5.fasta1,096,206EUKYeast Chromosome XII
F23F23_EUK_Sc_chrVII_NC_001139.9.fasta1,109,182EUKYeast Chromosome VII (Sample A)
F24F24_EUK_Sc_chrVII_NC_001139.9.fasta1,109,182EUKYeast Chromosome VII (Control Duplicate)
F25F25_EUK_Sc_chrXV_NC_001147.6.fasta1,109,537EUKYeast Chromosome XV
F26F26_EUK_Sc_chrIV_NC_001136.10.fasta1,557,523EUKYeast Chromosome IV; largest of yeast test set
F27F27_ARC_Mj_NC_000909.1.fasta1,688,828ARCM. jannaschii; Archaea extremophile
F28F28_BAC_Drad_chr1_NC_001263.1.fasta2,686,574BACD. radiodurans; radiation-resistant genome
F29F29_BAC_Ecoli_U00096.3.fasta4,708,032BACE. coli K12; "Rosetta Stone" of bacterial genomics
F30F30_EUK_Ce_chrI_NC_003279.8.fasta15,323,699EUKRoundworm Chromosome I; transition to multicellularity
F31F31_EUK_Ce_chrX_NC_003284.9.fasta18,014,315EUKRoundworm Chromosome X
F32F32_EUK_Ce_chrV_NC_003283.11.fasta21,272,974EUKRoundworm Chromosome V
F33F33_EUK_Os_chr10_NC_008391.2.fasta23,594,136EUKRice (Oryza sativa) Chromosome 10; plant genome
F34F34_EUK_At_chr5_NC_003076.8.fasta27,425,149EUKArabidopsis Chromosome 5
F35F35_EUK_At_chr1_NC_003070.9.fasta30,934,854EUKArabidopsis Chromosome 1; model plant architecture
F36F36_EUK_Hs_chr21_NC_000021.9.fasta47,488,540EUKHuman Chromosome 21; smallest human autosome
F37F37_EUK_Hs_chr22_NC_000022.11.fasta51,665,500EUKHuman Chromosome 22
F38F38_EUK_Hs_chrY_CM000686.2_sample.fasta58,181,267EUKHuman Y Chromosome; unique repeat structures
F39F39_EUK_Hs_chr19_NC_000019.10.fasta59,594,634EUKHuman Chromosome 19; gene-dense
F40F40_EUK_Hs_chr20_NC_000020.11.fasta65,518,294EUKHuman Chromosome 20
F41F41_EUK_Hs_chr18_NC_000018.10.fasta81,712,897EUKHuman Chromosome 18
F42F42_EUK_Hs_chr17_NC_000017.11.fasta84,645,123EUKHuman Chromosome 17
F43F43_EUK_Hs_chr16_NC_000016.10.fasta91,844,042EUKHuman Chromosome 16
F44F44_EUK_Hs_chr15_NC_000015.10.fasta103,691,101EUKHuman Chromosome 15
F45F45_EUK_Hs_chr14_NC_000014.9.fasta108,827,838EUKHuman Chromosome 14
F46F46_EUK_Hs_chr13_NC_000013.11.fasta116,270,459EUKHuman Chromosome 13
F47F47_EUK_Hs_chr12_NC_000012.12.fasta135,496,623EUKHuman Chromosome 12
F48F48_EUK_Hs_chr10_NC_000010.11.fasta136,027,438EUKHuman Chromosome 10
F49F49_EUK_Hs_chr11_NC_000011.10.fasta137,338,124EUKHuman Chromosome 11
F50F50_EUK_Hs_chr09_NC_000009.12.fasta140,701,352EUKHuman Chromosome 9; maximum complexity stress test
Research Design

Why These 50 Genomes?

📊
Design Principle
Entropy Gradient
Measure how "mathematical randomness" increases from F21 (a minimalist, human-designed synthetic genome) to F50 (a massive, evolved human chromosome full of "junk" DNA). The collection spans 5 orders of magnitude in size.
🌳
Taxonomy
All Three Domains of Life
Representatives from Bacteria, Archaea, and Eukaryota, plus Viruses and Transcripts. Ensures mathematical patterns are tested across the broadest possible phylogenetic diversity.
⚡
Key Boundary
Complexity Transitions
The jump between F29 (E. coli, 4.7 MB) and F30 (Roundworm chr I, 15.3 MB) is the most significant mathematical boundary — the prokaryote-to-eukaryote transition where genome organization fundamentally changes.
Control Pair: F23 & F24

Both are Yeast Chromosome VII (NC_001139.9) — identical 1,109,182-byte files. This deliberate duplicate ensures every encoder produces byte-for-byte identical output on identical input, validating deterministic behavior across all benchmark runs.

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